STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0784Transcriptional regulator. (445 aa)    
Predicted Functional Partners:
RMCC_0783
ThiJ/PfpI family protein.
 
     0.854
RMCC_3640
2-oxoglutarate dehydrogenase, E1 component.
   
 
 0.568
RMCC_5389
Alpha-ketoglutarate decarboxylase.
   
 
 0.568
RMCC_0785
Methyltransferase.
       0.522
RMCC_1957
Peptide synthetase.
   
 
 0.519
RMCC_6510
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.501
RMCC_1230
Pyruvate or indole-3-pyruvate decarboxylase pdc.
   
 0.488
RMCC_6429
Prephenate dehydrogenase.
    
 0.487
RMCC_5160
Homoserine dehydrogenase.
   
 0.483
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
    
  0.479
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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