STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0789Cpr/FNR family transcriptional regulator. (222 aa)    
Predicted Functional Partners:
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
 0.889
RMCC_6191
Family 3 adenylate cyclase.
 
 
 0.826
RMCC_3922
LuxR family transcriptional regulator.
  
 0.796
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.792
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
 0.792
whiA-3
Sporulation protein; Involved in cell division and chromosome segregation.
  
    0.776
RMCC_3863
Family 3 adenylate cyclase.
 
 
 0.773
RMCC_0626
Crp/Fnr familytranscriptional regulator.
  
  
 
0.726
RMCC_2855
Cyclase.
 
 
 0.710
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.707
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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