STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_08025,10-methylenetetrahydromethanopterin reductase. (335 aa)    
Predicted Functional Partners:
RMCC_0688
F420-dependent methylene-tetrahydromethanopterin reductase.
  
  
  0.781
RMCC_5252
Methylenetetrahydromethanopterin reductase.
  
  
  0.708
RMCC_1299
F420-dependent oxidoreductase, MSMEG_4879 family.
  
  
  0.663
RMCC_6608
Luciferase family protein.
  
  
  0.657
RMCC_3193
F420-dependent methylene-tetrahydromethanopterin reductase.
  
  
  0.641
RMCC_2217
Deazaflavin-dependent nitroreductase family protein.
  
     0.603
RMCC_0803
Short-chain dehydrogenase/reductase SDR.
    
  0.586
RMCC_0801
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.580
RMCC_1999
NADPH-dependent FMN reductase.
  
  0.578
RMCC_5295
Flavin reductase.
  
  0.578
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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