STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0806LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
RMCC_6751
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.765
RMCC_5023
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
RMCC_2912
Putative HTH-type transcriptional regulator budR; Belongs to the LysR transcriptional regulatory family.
  
     0.618
RMCC_3621
HTH-type transcriptional regulator LrhA; Belongs to the LysR transcriptional regulatory family.
  
     0.544
RMCC_0807
Putative uncharacterized protein.
       0.541
RMCC_0805
Uncharacterized protein.
       0.531
RMCC_1208
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.529
RMCC_0809
Transcriptional regulator.
   
   0.528
RMCC_3917
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.523
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.509
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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