STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0826Putative permease, nucleobase cation symporter-1 family; Belongs to the purine-cytosine permease (2.A.39) family. (485 aa)    
Predicted Functional Partners:
add3
Adenosine deaminase Add.
       0.798
RMCC_0827
Oxidoreductase, 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.773
RMCC_0829
Oxidoreductase, 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.773
RMCC_0825
XRE family transcriptional regulator.
  
    0.568
RMCC_0830
Uncharacterized protein.
       0.442
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.433
RMCC_4447
Amino acid permease.
  
    0.407
RMCC_6618
Amino acid permease-associated protein.
  
    0.405
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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