STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0840PucR family transcriptional regulator. (432 aa)    
Predicted Functional Partners:
RMCC_0837
Monooxygenase FAD-binding protein.
 
     0.831
RMCC_0838
Biphenyl-2,3-diol 1,2-dioxygenase.
 
     0.824
RMCC_0841
Unspecific monooxygenase.
  
    0.777
RMCC_0818
TetR family transcriptional regulator.
  
     0.734
RMCC_0842
Transcriptional regulator.
 
     0.659
RMCC_0839
Fumarylacetoacetate hydrolase.
 
     0.646
RMCC_4698
Uncharacterized protein.
  
     0.641
RMCC_0921
Uncharacterized protein.
  
     0.640
RMCC_0817
2,3-dihydroxybiphenyl-1,2-dioxygenase.
  
     0.604
RMCC_3660
NmrA family protein.
  
     0.590
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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