STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (407 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.990
RMCC_6769
PTS system D-fructose-specific IIABC component (F1P-forming), Frc family.
     
 0.969
RMCC_3206
Carbohydrate kinase; Belongs to the FGGY kinase family.
  
 
 0.935
RMCC_0853
Xylose repressor, ROK-family protein transcriptional regulator.
 
  
 0.918
RMCC_5921
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
    
 0.903
RMCC_6210
Alcohol dehydrogenase GroES domain-containing protein.
     
 0.896
RMCC_4848
Beta-glucosidase/6-phospho-beta-glucosidase/ beta -galactosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.875
RMCC_2269
Oxidoreductase, zinc-binding dehydrogenase.
     
 0.863
RMCC_5636
Ribulokinase; Belongs to the ribulokinase family.
  
  
 0.857
RMCC_3900
Ribokinase sugar kinase.
 
  
 0.793
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.