STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0899Aldo/keto reductase. (343 aa)    
Predicted Functional Partners:
RMCC_2127
2,5-diketo-D-gluconic acid reductase A.
 
 0.803
RMCC_0900
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.687
RMCC_2128
Oxidoreductase.
 
0.654
RMCC_0901
Short-chain dehydrogenase/reductase SDR.
 
  
  0.622
RMCC_1919
Glycerol uptake facilitator, MIP channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.551
RMCC_4019
Permease, glycerol uptake facilitator; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.551
RMCC_6234
Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.551
RMCC_6291
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.551
RMCC_0898
TetR family transcriptional regulator.
       0.548
RMCC_5127
Lipid-transfer protein.
     
 0.491
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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