STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0909Luciferase-like oxidoreductase. (345 aa)    
Predicted Functional Partners:
RMCC_0908
NADH:flavin oxidoreductase/NADH oxidase.
       0.828
RMCC_5944
F420-0--gamma-glutamyl ligase.
 
 
 0.821
RMCC_3342
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.760
RMCC_5943
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.755
RMCC_5200
Uncharacterized protein.
  
   
 0.732
RMCC_5419
Deazaflavin-dependent nitroreductase family protein.
  
   
 0.730
RMCC_6487
Uncharacterized protein.
  
   
 0.721
RMCC_4986
Cell entry (mce) related family protein.
  
   
 0.709
RMCC_3677
Hypothetical protein.
  
     0.700
RMCC_3796
Hemerythrin hhE cation binding domain-containing protein.
  
   
 0.698
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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