Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0935 | RMCC_1013 | RMCC_0935 | RMCC_1013 | Short-chain dehydrogenase/reductase SDR. | Polyketide synthetase mbtD. | 0.628 |
RMCC_0935 | RMCC_1016 | RMCC_0935 | RMCC_1016 | Short-chain dehydrogenase/reductase SDR. | Phenyloxazoline synthase mbtB. | 0.613 |
RMCC_0935 | RMCC_1916 | RMCC_0935 | RMCC_1916 | Short-chain dehydrogenase/reductase SDR. | Phosphotransferase system HPr (HPr) family protein; Belongs to the PEP-utilizing enzyme family. | 0.607 |
RMCC_0935 | RMCC_2496 | RMCC_0935 | RMCC_2496 | Short-chain dehydrogenase/reductase SDR. | Fatty acid synthase. | 0.963 |
RMCC_0935 | RMCC_3201 | RMCC_0935 | RMCC_3201 | Short-chain dehydrogenase/reductase SDR. | Short-chain dehydrogenase/reductase SDR. | 0.614 |
RMCC_0935 | RMCC_6293 | RMCC_0935 | RMCC_6293 | Short-chain dehydrogenase/reductase SDR. | Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB. | 0.616 |
RMCC_0935 | RMCC_6372 | RMCC_0935 | RMCC_6372 | Short-chain dehydrogenase/reductase SDR. | Polyketide synthase pks13. | 0.771 |
RMCC_0935 | RMCC_6601 | RMCC_0935 | RMCC_6601 | Short-chain dehydrogenase/reductase SDR. | Beta-ketoacyl synthase. | 0.760 |
RMCC_0935 | gltB | RMCC_0935 | RMCC_0328 | Short-chain dehydrogenase/reductase SDR. | Glutamate synthase (NADPH/NADH) large chain. | 0.616 |
RMCC_0935 | pks5-2 | RMCC_0935 | RMCC_1121 | Short-chain dehydrogenase/reductase SDR. | Polyketide synthase pks5. | 0.760 |
RMCC_1013 | RMCC_0935 | RMCC_1013 | RMCC_0935 | Polyketide synthetase mbtD. | Short-chain dehydrogenase/reductase SDR. | 0.628 |
RMCC_1013 | RMCC_1016 | RMCC_1013 | RMCC_1016 | Polyketide synthetase mbtD. | Phenyloxazoline synthase mbtB. | 0.999 |
RMCC_1013 | RMCC_1916 | RMCC_1013 | RMCC_1916 | Polyketide synthetase mbtD. | Phosphotransferase system HPr (HPr) family protein; Belongs to the PEP-utilizing enzyme family. | 0.757 |
RMCC_1013 | RMCC_2496 | RMCC_1013 | RMCC_2496 | Polyketide synthetase mbtD. | Fatty acid synthase. | 0.999 |
RMCC_1013 | RMCC_3201 | RMCC_1013 | RMCC_3201 | Polyketide synthetase mbtD. | Short-chain dehydrogenase/reductase SDR. | 0.628 |
RMCC_1013 | RMCC_6293 | RMCC_1013 | RMCC_6293 | Polyketide synthetase mbtD. | Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB. | 0.908 |
RMCC_1013 | RMCC_6372 | RMCC_1013 | RMCC_6372 | Polyketide synthetase mbtD. | Polyketide synthase pks13. | 0.997 |
RMCC_1013 | RMCC_6601 | RMCC_1013 | RMCC_6601 | Polyketide synthetase mbtD. | Beta-ketoacyl synthase. | 0.998 |
RMCC_1013 | gltB | RMCC_1013 | RMCC_0328 | Polyketide synthetase mbtD. | Glutamate synthase (NADPH/NADH) large chain. | 0.908 |
RMCC_1013 | pks5-2 | RMCC_1013 | RMCC_1121 | Polyketide synthetase mbtD. | Polyketide synthase pks5. | 0.998 |
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