Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0975 | dnaG | RMCC_0975 | RMCC_0974 | Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Belongs to the dGTPase family. Type 2 subfamily. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.929 |
RMCC_1124 | dnaG | RMCC_1124 | RMCC_0974 | methylmalonyl-CoA mutase. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.818 |
RMCC_2726 | RMCC_3128 | RMCC_2726 | RMCC_3128 | Uncharacterized protein. | DNA polymerase III subunit alpha. | 0.475 |
RMCC_2726 | RMCC_3596 | RMCC_2726 | RMCC_3596 | Uncharacterized protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.520 |
RMCC_2726 | dnaG | RMCC_2726 | RMCC_0974 | Uncharacterized protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.925 |
RMCC_2726 | polA | RMCC_2726 | RMCC_5120 | Uncharacterized protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.524 |
RMCC_2982 | dnaG | RMCC_2982 | RMCC_0974 | Cobalamin biosynthesis protein cobN. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.817 |
RMCC_3128 | RMCC_2726 | RMCC_3128 | RMCC_2726 | DNA polymerase III subunit alpha. | Uncharacterized protein. | 0.475 |
RMCC_3128 | RMCC_3596 | RMCC_3128 | RMCC_3596 | DNA polymerase III subunit alpha. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.759 |
RMCC_3128 | dnaG | RMCC_3128 | RMCC_0974 | DNA polymerase III subunit alpha. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.773 |
RMCC_3128 | polA | RMCC_3128 | RMCC_5120 | DNA polymerase III subunit alpha. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.676 |
RMCC_3128 | rpoC-2 | RMCC_3128 | RMCC_4149 | DNA polymerase III subunit alpha. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.703 |
RMCC_3596 | RMCC_2726 | RMCC_3596 | RMCC_2726 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Uncharacterized protein. | 0.520 |
RMCC_3596 | RMCC_3128 | RMCC_3596 | RMCC_3128 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA polymerase III subunit alpha. | 0.759 |
RMCC_3596 | dnaG | RMCC_3596 | RMCC_0974 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.961 |
RMCC_3596 | polA | RMCC_3596 | RMCC_5120 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.894 |
RMCC_3596 | rpoC-2 | RMCC_3596 | RMCC_4149 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.507 |
der | dnaG | RMCC_5700 | RMCC_0974 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.786 |
dnaG | RMCC_0975 | RMCC_0974 | RMCC_0975 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Belongs to the dGTPase family. Type 2 subfamily. | 0.929 |
dnaG | RMCC_1124 | RMCC_0974 | RMCC_1124 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | methylmalonyl-CoA mutase. | 0.818 |
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