STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0987Uncharacterized protein. (135 aa)    
Predicted Functional Partners:
RMCC_0988
Long-chain (C50)-Z-isoprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.933
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.906
RMCC_0986
MutT/NUDIX family protein; Belongs to the Nudix hydrolase family.
       0.809
RMCC_0990
Amidase; Belongs to the amidase family.
       0.778
RMCC_2335
Transmembrane protein.
  
     0.763
RMCC_1270
Hypothetical protein.
  
     0.759
RMCC_0065
Conserved protein of unknown function.
  
     0.755
RMCC_4528
Transmembrane protein.
  
     0.755
RMCC_5114
Hypothetical protein.
  
     0.751
RMCC_4630
Uncharacterized protein.
  
     0.749
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.