STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1004Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (485 aa)    
Predicted Functional Partners:
RMCC_1005
FAD dependent oxidoreductase.
  
 
  0.832
pks5-2
Polyketide synthase pks5.
  
 0.770
RMCC_6601
Beta-ketoacyl synthase.
  
 0.770
RMCC_0226
Urea amidolyase.
   
 
 0.730
gltB
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.708
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
  
 
 0.708
RMCC_1077
Aminotransferase class-III.
  
 0.698
RMCC_3883
Oxidoreductase subunit alpha.
   
 0.696
RMCC_5449
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.696
RMCC_4760
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.683
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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