STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiB1Amidohydrolase AmiB1; Belongs to the peptidase M20A family. (383 aa)    
Predicted Functional Partners:
aspA
Aspartate ammonia-lyase.
     
 0.827
RMCC_1068
Endoribonuclease L-PSP.
 
   
 0.826
RMCC_1067
Uncharacterized protein.
 
     0.781
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
  0.699
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
  0.699
RMCC_1064
Aspartate ammonia-lyase.
       0.689
RMCC_1069
Hypothetical protein.
       0.651
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.494
RMCC_4535
Gamma-glutamyltranspeptidase.
 
  
  0.448
RMCC_4300
Gamma-glutamyltransferase.
 
  
  0.437
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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