STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1069Hypothetical protein. (420 aa)    
Predicted Functional Partners:
RMCC_1068
Endoribonuclease L-PSP.
     0.965
RMCC_1067
Uncharacterized protein.
 
     0.928
RMCC_1070
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.816
RMCC_0074
DsrE family protein.
 
   
 0.644
amiB1
Amidohydrolase AmiB1; Belongs to the peptidase M20A family.
       0.642
aspA
Aspartate ammonia-lyase.
       0.640
RMCC_0076
Uncharacterized protein.
 
     0.632
RMCC_0078
Radical SAM protein.
 
     0.570
RMCC_1064
Aspartate ammonia-lyase.
       0.558
RMCC_0079
Selenophosphate synthetase.
 
   
 0.549
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.