STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1077Aminotransferase class-III. (962 aa)    
Predicted Functional Partners:
RMCC_5589
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.909
RMCC_4760
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.814
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.800
RMCC_5024
Delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.800
RMCC_1076
Uncharacterized protein.
 
   
 0.784
gabD2
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.784
RMCC_6510
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.756
RMCC_5160
Homoserine dehydrogenase.
    
 0.752
RMCC_6069
NAD-dependent aldehyde dehydrogenase.
  
 0.750
RMCC_0446
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
  
 0.747
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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