Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1122Penicillin-binding protein, beta-lactamase class C. (427 aa)    
Predicted Functional Partners:
RMCC_1123
Arginine/ornithine transport system ATPase.
       0.605
RMCC_1138
NLP/P60 protein.
  
 
  0.597
RMCC_1902
NLP/P60 protein.
  
 
  0.597
RMCC_3407
NLP/P60 protein.
  
 
  0.597
RMCC_3446
Invasion-associated protein.
  
 
  0.597
RMCC_1125
methylmalonyl-CoA mutase small subunit mutA.
       0.595
RMCC_1124
methylmalonyl-CoA mutase.
       0.594
RMCC_5848
Putative secreted chitinase.
    
 0.521
RMCC_4376
Esterase/lipase.
   
  
 0.519
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.504
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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