Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_0438 | RMCC_1128 | RMCC_0438 | RMCC_1128 | TetR family transcriptional regulator. | Membrane protease subunit, stomatin/prohibitin. | 0.735 |
RMCC_0438 | RMCC_3571 | RMCC_0438 | RMCC_3571 | TetR family transcriptional regulator. | Transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.766 |
RMCC_0438 | RMCC_4349 | RMCC_0438 | RMCC_4349 | TetR family transcriptional regulator. | Hypothetical protein. | 0.706 |
RMCC_1128 | RMCC_0438 | RMCC_1128 | RMCC_0438 | Membrane protease subunit, stomatin/prohibitin. | TetR family transcriptional regulator. | 0.735 |
RMCC_1128 | RMCC_1129 | RMCC_1128 | RMCC_1129 | Membrane protease subunit, stomatin/prohibitin. | Membrane protein. | 0.958 |
RMCC_1128 | RMCC_1130 | RMCC_1128 | RMCC_1130 | Membrane protease subunit, stomatin/prohibitin. | Hypothetical protein. | 0.655 |
RMCC_1128 | RMCC_2285 | RMCC_1128 | RMCC_2285 | Membrane protease subunit, stomatin/prohibitin. | Zinc protease pepR; Belongs to the peptidase M16 family. | 0.756 |
RMCC_1128 | RMCC_2574 | RMCC_1128 | RMCC_2574 | Membrane protease subunit, stomatin/prohibitin. | Rhomboid family protein. | 0.692 |
RMCC_1128 | RMCC_3571 | RMCC_1128 | RMCC_3571 | Membrane protease subunit, stomatin/prohibitin. | Transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.759 |
RMCC_1128 | RMCC_4349 | RMCC_1128 | RMCC_4349 | Membrane protease subunit, stomatin/prohibitin. | Hypothetical protein. | 0.690 |
RMCC_1128 | RMCC_5675 | RMCC_1128 | RMCC_5675 | Membrane protease subunit, stomatin/prohibitin. | Integral membrane protein. | 0.692 |
RMCC_1128 | arc | RMCC_1128 | RMCC_3029 | Membrane protease subunit, stomatin/prohibitin. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.777 |
RMCC_1128 | ftsH | RMCC_1128 | RMCC_1708 | Membrane protease subunit, stomatin/prohibitin. | Cell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.975 |
RMCC_1129 | RMCC_1128 | RMCC_1129 | RMCC_1128 | Membrane protein. | Membrane protease subunit, stomatin/prohibitin. | 0.958 |
RMCC_1129 | RMCC_1130 | RMCC_1129 | RMCC_1130 | Membrane protein. | Hypothetical protein. | 0.854 |
RMCC_1130 | RMCC_1128 | RMCC_1130 | RMCC_1128 | Hypothetical protein. | Membrane protease subunit, stomatin/prohibitin. | 0.655 |
RMCC_1130 | RMCC_1129 | RMCC_1130 | RMCC_1129 | Hypothetical protein. | Membrane protein. | 0.854 |
RMCC_2285 | RMCC_1128 | RMCC_2285 | RMCC_1128 | Zinc protease pepR; Belongs to the peptidase M16 family. | Membrane protease subunit, stomatin/prohibitin. | 0.756 |
RMCC_2285 | ftsH | RMCC_2285 | RMCC_1708 | Zinc protease pepR; Belongs to the peptidase M16 family. | Cell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.910 |
RMCC_2574 | RMCC_1128 | RMCC_2574 | RMCC_1128 | Rhomboid family protein. | Membrane protease subunit, stomatin/prohibitin. | 0.692 |
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