STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1180Phospholipase D/transphosphatidylase. (332 aa)    
Predicted Functional Partners:
RMCC_1181
ABC-type multidrug transport system, ATPase and permease component.
 
    0.856
RMCC_1151
Nitrogen fixation-like protein.
   
 
 0.848
cdsA
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
    
 0.755
RMCC_6717
Putative lipoprotein.
  
     0.736
RMCC_4197
Uncharacterized protein.
 
     0.727
RMCC_2866
Uncharacterized protein.
 
     0.718
RMCC_3295
Sphingosine/diacylglycerol kinase-like enzyme.
  
 0.716
RMCC_3337
Uncharacterized protein.
  
     0.713
RMCC_3884
pfkB protein.
  
  
  0.693
serB2
Phosphoserine phosphatase serB2.
    
 0.686
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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