STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1198Uncharacterized protein. (243 aa)    
Predicted Functional Partners:
RMCC_1199
Aminoglycosides/tetracycline-transport integral membrane protein.
 
   
 0.970
RMCC_2379
Alpha/beta hydrolase family protein.
  
     0.668
ribE
Riboflavin synthase subunit alpha.
     
 0.626
RMCC_6180
Hypothetical protein.
  
     0.598
RMCC_3407
NLP/P60 protein.
  
     0.596
RMCC_3309
Transmembrane protein.
  
     0.568
RMCC_3996
Conserved proline rich membrane protein.
  
     0.535
RMCC_2759
Acyltransferase family protein.
  
     0.532
RMCC_4062
Transmembrane transport protein MmpL1.
  
     0.532
RMCC_6449
Transmembrane transport protein MmpL1.
  
     0.505
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.