STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1208LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
RMCC_3917
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.860
RMCC_4120
Transcriptional regulator.
   
   0.784
RMCC_1311
TetR family transcriptional regulator.
   
   0.782
RMCC_3186
TetR family transcriptional regulator.
   
   0.781
RMCC_6340
Transcriptional regulator.
   
    0.766
RMCC_4395
DNA-binding transcriptional activator.
   
    0.765
cobB-3
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.764
RMCC_0497
Transcriptional regulatory protein kdpE.
   
    0.762
RMCC_3023
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain.
   
    0.760
RMCC_4264
Transcriptional regulator.
   
    0.760
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.