STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1285PPOX class probable F420-dependent enzyme. (140 aa)    
Predicted Functional Partners:
RMCC_1284
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein.
 
     0.809
RMCC_1283
Lipase (class 2), precursor.
       0.618
RMCC_5173
F420-dependent methylene-tetrahydromethanopterin reductase.
  
     0.485
RMCC_3367
PPOX class F420-dependent protein.
 
   
 0.461
RMCC_0373
Pyridoxamine 5'-phosphate oxidase family protein.
  
     0.456
RMCC_0341
Histidine kinase.
  
     0.452
RMCC_1299
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.452
RMCC_3452
Peptidase M23B.
 
      0.437
RMCC_0909
Luciferase-like oxidoreductase.
  
     0.436
RMCC_5633
Luciferase family protein.
  
     0.429
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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