STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1300Polyketide cyclase/dehydrase and lipid transport. (146 aa)    
Predicted Functional Partners:
RMCC_4649
XRE family transcriptional regulator.
  
     0.745
RMCC_4625
Phospholipid/glycerol acyltransferase.
  
     0.706
RMCC_4636
Protein of unknown function.
  
     0.669
RMCC_3845
Anion-transporting ATPase.
  
     0.640
RMCC_0093
ATP-binding protein ABC transporter.
  
     0.634
RMCC_1299
F420-dependent oxidoreductase, MSMEG_4879 family.
       0.601
RMCC_4626
UDP-glucose 4-epimerase galE2.
  
     0.600
RMCC_3517
Transmembrane protein.
  
     0.571
RMCC_3844
Anion transporter ATPase.
  
     0.561
RMCC_1298
GntR family transcriptional regulator.
       0.539
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.