Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RMCC_1306Binding-protein-dependent transport system inner membrane protein. (283 aa)    
Predicted Functional Partners:
RMCC_1305
ABC-type transporter, integral membrane subunit.
 
 0.990
RMCC_3706
Oligopeptide-transport integral membrane protein ABC transporter oppB.
 
 0.986
RMCC_2030
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.985
RMCC_3704
Oligopeptide-transport ATP-binding protein ABC transporter oppD; Belongs to the ABC transporter superfamily.
 0.978
RMCC_3980
ABC transporter-like protein; Belongs to the ABC transporter superfamily.
 0.978
RMCC_1304
Extracellular solute-binding protein family 5, precursor.
 
 0.975
RMCC_3626
Oligopeptide/dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  0.970
RMCC_1725
Oligopeptide/dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  0.965
RMCC_3978
Binding-protein-dependent transport systems inner membrane component.
 
 0.963
RMCC_2032
Binding-protein-dependent transport systems inner membrane component.
 
 0.960
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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