STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1561Lipid-transfer protein. (352 aa)    
Predicted Functional Partners:
RMCC_1560
Nucleic acid-binding protein.
 
 0.996
RMCC_1288
3-hydroxyacyl-CoA dehydrogenase.
  
 0.984
RMCC_1563
Ketosteroid isomerase-like protein.
 
     0.971
RMCC_1603
Nucleic acid-binding protein.
 
 0.967
RMCC_1604
acyl-CoA dehydrogenase fadE29.
  
 
 0.967
RMCC_1551
enoyl-CoA hydratase.
 
 0.958
RMCC_2344
Acyl dehydratase.
 
 0.955
RMCC_1562
Lipid carrier protein or keto acyl-CoA thiolase ltp3.
 
  
0.951
RMCC_5126
Nucleic acid-binding protein.
 
 0.926
RMCC_1559
Coenzyme F420-dependent oxidoreductase.
 
   
 0.887
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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