STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1579Oligopeptide transporter ATP-binding component; Belongs to the ABC transporter superfamily. (299 aa)    
Predicted Functional Partners:
RMCC_1580
Oligopeptide ABC transporter permease.
 
 0.990
RMCC_1581
Didpeptide ABC transporter permease protein.
 
 
 0.980
RMCC_3979
Dipeptide/oligopeptide/nickel ABC transporter permease.
 
 0.970
RMCC_3705
Oligopeptide-transport integral membrane protein ABC transporter oppC.
 
 0.969
RMCC_1582
ABC transporter substrate-binding protein.
 
 
 0.958
RMCC_1306
Binding-protein-dependent transport system inner membrane protein.
 
 0.953
RMCC_6809
ABC transporter permease.
 
 0.948
RMCC_2031
Binding-protein-dependent transport systems inner membrane component.
 
 0.947
RMCC_3628
Binding-protein-dependent transporters inner membrane component.
 
 0.947
RMCC_1726
Binding-protein-dependent transport system inner membrane protein.
 
 0.945
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.