Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0411 | RMCC_0869 | Uncharacterized protein. | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | 0.536 |
RMCC_0411 | RMCC_1624 | Uncharacterized protein. | Endoglycoceramidase. | 0.635 |
RMCC_0411 | RMCC_4365 | Uncharacterized protein. | Thioredoxin domain protein. | 0.663 |
RMCC_0869 | RMCC_0411 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Uncharacterized protein. | 0.536 |
RMCC_0869 | RMCC_1624 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Endoglycoceramidase. | 0.709 |
RMCC_0869 | RMCC_2212 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Glycoside hydrolase family 3 domain protein; Belongs to the glycosyl hydrolase 3 family. | 0.780 |
RMCC_0869 | RMCC_2541 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Glycoside hydrolase family 10. | 0.852 |
RMCC_0869 | RMCC_3587 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Protein of unknown function. | 0.675 |
RMCC_0869 | RMCC_3588 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Uncharacterized protein. | 0.614 |
RMCC_0869 | RMCC_4365 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Thioredoxin domain protein. | 0.910 |
RMCC_0869 | RMCC_4848 | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | Beta-glucosidase/6-phospho-beta-glucosidase/ beta -galactosidase; Belongs to the glycosyl hydrolase 1 family. | 0.752 |
RMCC_1624 | RMCC_0411 | Endoglycoceramidase. | Uncharacterized protein. | 0.635 |
RMCC_1624 | RMCC_0869 | Endoglycoceramidase. | Cellulase celA1; Belongs to the glycosyl hydrolase family 6. | 0.709 |
RMCC_1624 | RMCC_2212 | Endoglycoceramidase. | Glycoside hydrolase family 3 domain protein; Belongs to the glycosyl hydrolase 3 family. | 0.794 |
RMCC_1624 | RMCC_2541 | Endoglycoceramidase. | Glycoside hydrolase family 10. | 0.876 |
RMCC_1624 | RMCC_3364 | Endoglycoceramidase. | Uncharacterized protein. | 0.691 |
RMCC_1624 | RMCC_3587 | Endoglycoceramidase. | Protein of unknown function. | 0.766 |
RMCC_1624 | RMCC_3588 | Endoglycoceramidase. | Uncharacterized protein. | 0.715 |
RMCC_1624 | RMCC_3951 | Endoglycoceramidase. | Alpha-glucosidase aglA. | 0.661 |
RMCC_1624 | RMCC_4365 | Endoglycoceramidase. | Thioredoxin domain protein. | 0.956 |
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