STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1625Short chain dehydrogenase. (263 aa)    
Predicted Functional Partners:
RMCC_1626
acyl-CoA dehydrogenase.
 
 
 0.994
fadE31
acyl-CoA dehydrogenase.
 
 
 0.988
RMCC_2496
Fatty acid synthase.
  
 0.983
RMCC_1615
Oxidoreductase.
  
 
 0.971
RMCC_1613
CoA-transferase subunit alpha.
  
 
 0.959
RMCC_1629
acyl-CoA dehydrogenase fadE32.
 
 
 0.956
RMCC_1630
acyl-CoA dehydrogenase fadE33.
 
 
  0.951
RMCC_1614
CoA-transferase subunit beta.
  
 
  0.950
RMCC_1612
enoyl-CoA hydratase.
  
 0.949
RMCC_4266
3-oxoacyl-ACP synthase.
  
 
 0.901
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.