Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCC_1632 | RMCC_1633 | RMCC_1632 | RMCC_1633 | Formiminoglutamate deiminase. | Amidase, hydantoinase/carbamoylase family. | 0.963 |
RMCC_1632 | RMCC_1635 | RMCC_1632 | RMCC_1635 | Formiminoglutamate deiminase. | Periplasmic glycine betaine/choline-binding (lipo)protein. | 0.716 |
RMCC_1632 | RMCC_1636 | RMCC_1632 | RMCC_1636 | Formiminoglutamate deiminase. | ABC-type proline/glycine betaine transport system, permease component. | 0.724 |
RMCC_1632 | RMCC_1637 | RMCC_1632 | RMCC_1637 | Formiminoglutamate deiminase. | ABC-type proline/glycine betaine transport system, permease component. | 0.724 |
RMCC_1632 | RMCC_1638 | RMCC_1632 | RMCC_1638 | Formiminoglutamate deiminase. | ABC-type proline/glycine betaine transport system, ATPase component. | 0.720 |
RMCC_1632 | RMCC_1639 | RMCC_1632 | RMCC_1639 | Formiminoglutamate deiminase. | Transcriptional regulator. | 0.732 |
RMCC_1632 | RMCC_1640 | RMCC_1632 | RMCC_1640 | Formiminoglutamate deiminase. | Histidine ammonia-lyase. | 0.867 |
RMCC_1632 | RMCC_1641 | RMCC_1632 | RMCC_1641 | Formiminoglutamate deiminase. | Histidine ammonia-lyase. | 0.775 |
RMCC_1632 | hutI | RMCC_1632 | RMCC_1631 | Formiminoglutamate deiminase. | Imidazolonepropionase. | 0.978 |
RMCC_1632 | hutU | RMCC_1632 | RMCC_1634 | Formiminoglutamate deiminase. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.942 |
RMCC_1633 | RMCC_1632 | RMCC_1633 | RMCC_1632 | Amidase, hydantoinase/carbamoylase family. | Formiminoglutamate deiminase. | 0.963 |
RMCC_1633 | RMCC_1635 | RMCC_1633 | RMCC_1635 | Amidase, hydantoinase/carbamoylase family. | Periplasmic glycine betaine/choline-binding (lipo)protein. | 0.706 |
RMCC_1633 | RMCC_1636 | RMCC_1633 | RMCC_1636 | Amidase, hydantoinase/carbamoylase family. | ABC-type proline/glycine betaine transport system, permease component. | 0.704 |
RMCC_1633 | RMCC_1637 | RMCC_1633 | RMCC_1637 | Amidase, hydantoinase/carbamoylase family. | ABC-type proline/glycine betaine transport system, permease component. | 0.704 |
RMCC_1633 | RMCC_1638 | RMCC_1633 | RMCC_1638 | Amidase, hydantoinase/carbamoylase family. | ABC-type proline/glycine betaine transport system, ATPase component. | 0.706 |
RMCC_1633 | RMCC_1639 | RMCC_1633 | RMCC_1639 | Amidase, hydantoinase/carbamoylase family. | Transcriptional regulator. | 0.742 |
RMCC_1633 | RMCC_1640 | RMCC_1633 | RMCC_1640 | Amidase, hydantoinase/carbamoylase family. | Histidine ammonia-lyase. | 0.652 |
RMCC_1633 | hutI | RMCC_1633 | RMCC_1631 | Amidase, hydantoinase/carbamoylase family. | Imidazolonepropionase. | 0.795 |
RMCC_1633 | hutU | RMCC_1633 | RMCC_1634 | Amidase, hydantoinase/carbamoylase family. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.795 |
RMCC_1635 | RMCC_1632 | RMCC_1635 | RMCC_1632 | Periplasmic glycine betaine/choline-binding (lipo)protein. | Formiminoglutamate deiminase. | 0.716 |
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