STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1637ABC-type proline/glycine betaine transport system, permease component. (214 aa)    
Predicted Functional Partners:
RMCC_1638
ABC-type proline/glycine betaine transport system, ATPase component.
 
 0.994
RMCC_1635
Periplasmic glycine betaine/choline-binding (lipo)protein.
 
 
 0.988
RMCC_6425
Osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system ATP-binding protein proV.
 
 0.975
RMCC_1636
ABC-type proline/glycine betaine transport system, permease component.
 
 
0.971
RMCC_6424
Amino acid ABC transporter substrate-binding protein.
 
 
 0.952
RMCC_5381
Glycine betaine ABC transporter substrate-binding protein.
 
 
 0.902
RMCC_6427
Osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system permease protein proZ.
 
 
0.883
RMCC_1639
Transcriptional regulator.
       0.774
RMCC_1632
Formiminoglutamate deiminase.
  
    0.724
hutI
Imidazolonepropionase.
       0.719
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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