STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_16453-hydroxybutyrate dehydrogenase. (248 aa)    
Predicted Functional Partners:
RMCC_1644
acetoacetyl-CoA synthetase.
    
  0.980
RMCC_2496
Fatty acid synthase.
  
 0.963
RMCC_3162
hydroxymethylglutaryl-CoA lyase.
   
 
  0.886
RMCC_1646
General substrate transporter.
 
     0.872
RMCC_6372
Polyketide synthase pks13.
  
 0.771
RMCC_6160
3-oxoacid CoA-transferase, A subunit.
  
  
  0.767
RMCC_0045
3-oxoacid CoA-transferase subunit B.
  
 
  0.764
pcaI
3-oxoacid CoA-transferase subunit A.
  
  
  0.763
pks5-2
Polyketide synthase pks5.
  
 0.760
RMCC_6601
Beta-ketoacyl synthase.
  
 0.760
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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