STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1650Biphenyl-2,3-diol-1,2-dioxygenase bphC. (302 aa)    
Predicted Functional Partners:
RMCC_1652
Oxidoreductase.
 
 
  0.992
RMCC_1651
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphD.
 
  
  0.990
RMCC_1649
Oxidoreductase.
 
 
  0.963
RMCC_3158
acyl-CoA dehydrogenase.
  
 
  0.886
fadE31
acyl-CoA dehydrogenase.
  
 
  0.821
RMCC_1653
Hemoglobine-related protein hmp.
 
  
  0.820
RMCC_1597
3-ketosteroid-delta-1-dehydrogenase.
 
   0.812
RMCC_1626
acyl-CoA dehydrogenase.
  
 
  0.809
RMCC_2924
Uncharacterized protein.
 
 
  0.801
RMCC_0596
Possible oxidoreductase.
  
  
  0.793
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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