STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1673Metallo-beta-lactamase superfamily protein. (299 aa)    
Predicted Functional Partners:
RMCC_1674
Na+/H+ antiporter NhaD-like permease.
       0.857
RMCC_1671
Cobalamin synthesis protein CobW.
     
 0.792
rpmE2
50S ribosomal protein L31.
       0.790
RMCC_2867
Hypothetical protein.
  
     0.703
RMCC_6769
PTS system D-fructose-specific IIABC component (F1P-forming), Frc family.
    
 0.651
RMCC_4470
Stas domain-containing protein.
  
     0.641
RMCC_6200
Protein of unknown function DUF222/HNH endonuclease.
  
     0.606
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.551
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
       0.551
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.551
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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