Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RMCC_1920Transcriptional regulator. (246 aa)    
Predicted Functional Partners:
RMCC_0226
Urea amidolyase.
  
 
  0.836
RMCC_5922
Transcriptional regulator.
  
     0.772
RMCC_6457
IclR family transcriptional regulator.
  
     0.772
RMCC_5506
IclR family transcriptional regulator.
  
     0.769
RMCC_6697
Regulatory proteins IclR.
  
     0.765
RMCC_1639
Transcriptional regulator.
  
     0.754
RMCC_2099
Transcriptional regulator.
  
     0.749
RMCC_6161
Transcriptional regulator.
  
     0.747
RMCC_3883
Oxidoreductase subunit alpha.
    
  0.592
RMCC_1919
Glycerol uptake facilitator, MIP channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.549
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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