STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1932Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (279 aa)    
Predicted Functional Partners:
RMCC_0149
Uncharacterized protein.
  
     0.652
RMCC_0343
Uncharacterized protein.
  
     0.609
RMCC_2487
Integrase; Belongs to the 'phage' integrase family.
  
     0.546
RMCC_1933
Prevent-host-death protein.
       0.544
RMCC_4730
Transcriptional regulator.
  
     0.540
RMCC_4760
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.535
RMCC_2728
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
 
 
 0.527
RMCC_4982
Acyltransferase.
  
     0.492
RMCC_1934
Prevent-host-death protein.
       0.485
RMCC_2759
Acyltransferase family protein.
  
     0.483
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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