STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1950ABC transporter substrate-binding protein. (332 aa)    
Predicted Functional Partners:
RMCC_1947
ABC-type transporter, permease components; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.987
fepC
Ferric enterobactin transport ATP-binding protein.
 
 0.986
RMCC_1040
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.976
RMCC_1039
ABC transporter ATP-binding protein.
 
 0.964
RMCC_1948
Ferric enterobactin ABC transporter, permease protein FepG; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.918
RMCC_2041
FEIII-dicitrate-binding periplasmic lipoprotein FecB.
 
  
 0.777
RMCC_1952
L-ornithine 5-/L-lysine 6-monooxygenase.
 
   
 0.721
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
   0.621
RMCC_1946
Putative siderophore-interacting protein.
 
  
 0.587
RMCC_4495
Pyridoxamine 5'-phosphate oxidase-like protein.
  
    0.547
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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