Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCC_1950ABC transporter substrate-binding protein. (332 aa)    
Predicted Functional Partners:
fepC
Ferric enterobactin transport ATP-binding protein.
 
 0.980
RMCC_1947
ABC-type transporter, permease components; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.977
RMCC_1948
Ferric enterobactin ABC transporter, permease protein FepG; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.962
RMCC_1039
ABC transporter ATP-binding protein.
 
 0.948
RMCC_1040
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.924
RMCC_2041
FEIII-dicitrate-binding periplasmic lipoprotein FecB.
 
 
 0.922
RMCC_1952
L-ornithine 5-/L-lysine 6-monooxygenase.
 
   
 0.725
RMCC_1946
Putative siderophore-interacting protein.
 
 
 0.664
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
   0.590
RMCC_2188
Mycobactin utilization protein viuB.
 
 
 0.568
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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