STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1960Hydroxypyruvate isomerase; Belongs to the hyi family. (268 aa)    
Predicted Functional Partners:
RMCC_1959
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.831
RMCC_1958
Predicted acyltransferase.
       0.773
RMCC_1720
Oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  0.715
RMCC_2551
2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.651
RMCC_4256
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
 0.646
RMCC_1729
D-isomer specific 2-hydroxyacid dehydrogenase.
   
 
 0.641
RMCC_6304
3-hydroxyisobutyrate dehydrogenase.
 
 0.628
RMCC_3322
Lactate dehydrogenase-like oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  0.617
RMCC_6301
6-phosphogluconate dehydrogenase, NAD-binding.
 
 0.607
RMCC_6805
Aldolase; Belongs to the HpcH/HpaI aldolase family.
     
 0.604
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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