Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1963Uncharacterized protein. (255 aa)    
Predicted Functional Partners:
RMCC_1314
Putative membrane protein, precursor.
  
     0.669
RMCC_0868
Uncharacterized protein.
  
     0.624
RMCC_5066
Esterase.
 
     0.567
RMCC_4584
Esterase.
  
     0.556
RMCC_3124
Uncharacterized protein.
  
     0.554
RMCC_2812
Membrane protein.
 
     0.534
RMCC_1962
Pyruvate dehydrogenase; Belongs to the TPP enzyme family.
       0.515
RMCC_2251
Putative esterase family protein.
  
     0.501
RMCC_6701
Protein of unknown function.
  
     0.440
RMCC_2706
Type VII secretion protein EccB.
  
     0.429
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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