STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1964AMP-dependent synthetase and ligase. (486 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
 
 0.906
RMCC_6601
Beta-ketoacyl synthase.
 
 0.906
RMCC_1013
Polyketide synthetase mbtD.
 
 0.887
RMCC_6372
Polyketide synthase pks13.
 
 0.866
RMCC_1965
acyl-CoA dehydrogenase.
  
 
  0.830
RMCC_2520
Fatty acyl-CoA synthetase.
 
0.815
RMCC_2496
Fatty acid synthase.
  
 
 0.811
RMCC_1966
acyl-CoA dehydrogenase.
  
 
  0.799
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.743
RMCC_1957
Peptide synthetase.
  
0.718
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.