Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCC_1964AMP-dependent synthetase and ligase. (486 aa)    
Predicted Functional Partners:
pks5-2
Polyketide synthase pks5.
  
 0.956
RMCC_6601
Beta-ketoacyl synthase.
  
 0.956
RMCC_6372
Polyketide synthase pks13.
  
 0.918
RMCC_1013
Polyketide synthetase mbtD.
  
 0.914
RMCC_1965
acyl-CoA dehydrogenase.
  
 
  0.807
RMCC_2520
Fatty acyl-CoA synthetase.
  
 0.796
RMCC_1966
acyl-CoA dehydrogenase.
  
 
  0.778
RMCC_2496
Fatty acid synthase.
  
 
 0.771
RMCC_3300
acetyl-CoA carboxylase beta chain.
    
 0.673
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.629
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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