STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1968GAF sensor-containing diguanylate cyclase/phosphodiesterase. (614 aa)    
Predicted Functional Partners:
RMCC_0345
Family 3 adenylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
 0.998
RMCC_1935
Diguanylate phosphodiesterase.
 
0.998
RMCC_6549
Diguanylate cyclase.
 
0.989
RMCC_4250
Thioredoxin reductase.
  
 0.986
RMCC_3790
Response regulator receiver protein.
  
 0.985
RMCC_4227
GAF domain-containing protein.
 
 0.984
RMCC_3922
LuxR family transcriptional regulator.
 
 0.981
RMCC_6794
Diguanylate cyclase.
 
 0.980
RMCC_3791
Two-component system sensor kinase.
   
 0.975
RMCC_6191
Family 3 adenylate cyclase.
 
 0.975
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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