Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1990Uncharacterized protein. (338 aa)    
Predicted Functional Partners:
RMCC_0559
Transmembrane protein.
   
  
 0.814
RMCC_1991
Cell filamentation protein.
       0.814
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.811
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
 0.811
RMCC_0590
Uncharacterized protein.
   
  
 0.805
RMCC_0563
Hypothetical protein.
   
  
 0.804
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.804
RMCC_2758
4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
   
 
 0.794
RMCC_0576
Hypothetical protein.
  
    0.780
RMCC_0577
Uncharacterized protein.
  
    0.765
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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