STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_1998Transcriptional regulatory protein. (203 aa)    
Predicted Functional Partners:
dinB2
DNA-directed DNA polymerase; Belongs to the DNA polymerase type-Y family.
     
 0.912
RMCC_1999
NADPH-dependent FMN reductase.
 
     0.866
RMCC_4264
Transcriptional regulator.
  
    0.843
RMCC_4395
DNA-binding transcriptional activator.
  
    0.823
RMCC_3186
TetR family transcriptional regulator.
  
    0.817
RMCC_4120
Transcriptional regulator.
  
    0.791
RMCC_4877
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.791
RMCC_1311
TetR family transcriptional regulator.
  
    0.785
RMCC_1996
Na+/H+ antiporter.
       0.781
RMCC_3995
TetR family transcriptional regulator.
  
    0.779
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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