STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2007Uncharacterized protein. (47 aa)    
Predicted Functional Partners:
RMCC_2006
Integral membrane transporter.
       0.773
RMCC_2005
Uncharacterized protein.
       0.572
RMCC_2008
phytanoyl-CoA dioxygenase.
       0.498
RMCC_2095
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
      
 0.493
RMCC_6178
Uncharacterized protein.
      
 0.493
RMCC_6313
Uncharacterized protein.
      
 0.493
RMCC_0965
Uncharacterized protein.
      
 0.491
RMCC_4397
Uncharacterized protein.
      
 0.459
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.