Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RMCC_2008phytanoyl-CoA dioxygenase. (295 aa)    
Predicted Functional Partners:
RMCC_2839
acetyl-CoA acetyltransferase.
  
 
  0.664
RMCC_2859
Tetratricopeptide repeat protein.
  
     0.637
lipP
Beta-lactamase.
  
     0.602
RMCC_2009
Putative acetyltransferase.
       0.590
RMCC_2578
Hydrolase.
     
  0.569
RMCC_0728
acetyl-CoA acetyltransferase.
  
 
  0.555
RMCC_1739
Transferase.
  
  
 0.555
RMCC_2994
Dipeptidase pepE; Belongs to the peptidase M24B family.
    
 0.535
RMCC_5395
Cytoplasmic peptidase pepQ.
    
 0.535
RMCC_2006
Integral membrane transporter.
       0.498
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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