STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2010Geranylgeranyl reductase. (394 aa)    
Predicted Functional Partners:
RMCC_2059
Electron transfer flavoprotein beta subunit fixA.
  
 
 0.776
RMCC_2060
Electron transfer flavoprotein alpha subunit fixB.
  
 
 0.740
RMCC_2935
FAD dependent oxidoreductase.
  
 
 0.649
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.617
RMCC_2011
TetR family transcriptional regulator.
       0.583
RMCC_6364
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.582
RMCC_4520
Polyprenyl-diphosphate synthase grcC1; Belongs to the FPP/GGPP synthase family.
 
 0.570
RMCC_4269
Transmembrane anti-sigma factor.
   
  
 0.561
RMCC_2834
Fibronectin-attachment protein.
  
     0.549
RMCC_6372
Polyketide synthase pks13.
    
 0.547
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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