STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2033Isochorismatase hydrolase. (223 aa)    
Predicted Functional Partners:
RMCC_0226
Urea amidolyase.
    
  0.858
RMCC_2035
Beta-lactamase domain-containing protein.
 
     0.838
RMCC_0739
Probable hydrolase protein.
  
  
  0.799
RMCC_2034
Extracellular solute-binding protein.
  
    0.781
RMCC_2036
Allantoinase.
       0.780
RMCC_2030
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.775
RMCC_2039
Uncharacterized protein.
       0.775
RMCC_2031
Binding-protein-dependent transport systems inner membrane component.
       0.774
RMCC_2037
Hydantoin racemase.
       0.774
alc-2
Allantoicase; Belongs to the allantoicase family.
       0.774
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.