STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2045GntR family transcriptional regulator. (466 aa)    
Predicted Functional Partners:
RMCC_2046
Integral membrane protein.
 
     0.712
RMCC_6510
Aspartate kinase; Belongs to the aspartokinase family.
   
 
 0.702
RMCC_0266
Asparagine synthetase asnB.
   
 
 0.644
RMCC_2159
Asparagine synthase, glutamine-hydrolyzing.
   
 
 0.644
RMCC_3640
2-oxoglutarate dehydrogenase, E1 component.
   
 
 0.568
RMCC_5389
Alpha-ketoglutarate decarboxylase.
   
 
 0.568
RMCC_2239
GntR family transcriptional regulator.
  
   
 0.564
RMCC_5159
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
 
 
  0.546
RMCC_1957
Peptide synthetase.
   
 
 0.519
RMCC_4974
Transcriptional regulator.
     
 0.494
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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