STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2115DAK2 domain fusion protein YloV. (537 aa)    
Predicted Functional Partners:
RMCC_3376
DegV family protein.
 0.988
recG
ATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.955
RMCC_2118
Membrane or exported protein.
       0.887
RMCC_2117
Membrane or exported protein.
       0.800
RMCC_5440
HAD-superfamily hydrolase; Belongs to the HAD-like hydrolase superfamily.
      
 0.729
rpmB-2
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.636
RMCC_5716
DNA repair protein recN; May be involved in recombinational repair of damaged DNA.
   
    0.509
RMCC_2766
Stress protein, Gls24 family.
  
  
 0.461
RMCC_2769
Uncharacterized protein.
  
  
 0.461
RMCC_5102
Alkaline shock protein.
  
  
 0.461
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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