STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_2124Integral membrane indolylacetylinositol arabinosyltransferase embB. (1050 aa)    
Predicted Functional Partners:
RMCC_6390
Transmembrane protein.
 
 
 0.937
RMCC_6365
Transmembrane protein.
  
 
 0.933
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
   0.914
RMCC_2396
Integral membrane protein.
  
  
 0.912
RMCC_6370
Cutinase.
  
  0.851
RMCC_6391
Short chain dehydrogenase.
 
  
 0.827
RMCC_6393
Integral membrane protein.
 
     0.766
RMCC_6215
Hypothetical protein.
  
     0.731
RMCC_3080
Hypothetical protein.
  
     0.717
RMCC_4696
Peptidase M12A astacin.
   
  0.706
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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