Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCC_2161Hydrolase, peptidase M42 family protein. (414 aa)    
Predicted Functional Partners:
RMCC_2160
GNAT family acetyltransferase.
 
 
 0.950
RMCC_2159
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.915
RMCC_3780
Glutamyl aminopeptidase, M42 family protein.
  
     0.755
RMCC_2162
Hypothetical protein.
       0.732
RMCC_1624
Endoglycoceramidase.
     
 0.518
RMCC_0266
Asparagine synthetase asnB.
 
  
 0.471
RMCC_2164
RNA-binding protein; Belongs to the UPF0109 family.
       0.451
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.450
RMCC_0869
Cellulase celA1; Belongs to the glycosyl hydrolase family 6.
     
  0.432
rimM
16S rRNA-processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.416
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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